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Friday, December 23, 2011

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Fwd: PLoS ONE New Articles Published

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From: "PLoS ONE" <news@lists.plos.org>
Date: Dec 23, 2011 6:07 PM
Subject: PLoS ONE New Articles Published
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New Articles in PLoS ONE

Published December 15, 2011 to December 21, 2011

If articles are interdisciplinary then they may appear under more than one subject heading in the list below.

Subjects:

Biochemistry

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, Leo Izzi, Giovanni Camussi, Marco Forni

Structural Analysis of the UBA Domain of X-linked Inhibitor of Apoptosis Protein Reveals Different Surfaces for Ubiquitin-Binding and Self-Association
Man Kit Tse, Sin Kam Hui, Yinhua Yang, Si-Tao Yin, Hong-Yu Hu, Bing Zou, Benjamin Chun Yu Wong, Kong Hung Sze

Farnesol-Induced Apoptosis in Candida albicans Is Mediated by Cdr1-p Extrusion and Depletion of Intracellular Glutathione
Jingsong Zhu, Bastiaan P. Krom, Dominique Sanglard, Chaidan Intapa, Clinton C. Dawson, Brian M. Peters, Mark E. Shirtliff, Mary Ann Jabra-Rizk

Checkpoint Signaling, Base Excision Repair, and PARP Promote Survival of Colon Cancer Cells Treated with 5-Fluorodeoxyuridine but Not 5-Fluorouracil
Liyi Geng, Amelia M. Huehls, Jill M. Wagner, Catherine J. Huntoon, Larry M. Karnitz

Autoantibody Signature Differentiates Wilms Tumor Patients from Neuroblastoma Patients
Jana Schmitt, Andreas Keller, Nasenien Nourkami-Tutdibi, Sabrina Heisel, Nunja Habel, Petra Leidinger, Nicole Ludwig, Manfred Gessler, Norbert Graf, Frank Berthold, Hans-Peter Lenhof, Eckart Meese

Immunoglobulin E and Mast Cell Proteases Are Potential Risk Factors of Human Pre-Diabetes and Diabetes Mellitus
Zhen Wang, Hong Zhang, Xu-Hui Shen, Kui-Li Jin, Guo-fen Ye, Li Qian, Bo Li, Yong-Hong Zhang, Guo-Ping Shi

Increased FAT/CD36 Cycling and Lipid Accumulation in Myotubes Derived from Obese Type 2 Diabetic Patients
Celine Aguer, Marc Foretz, Louise Lantier, Sophie Hebrard, Benoit Viollet, Jacques Mercier, Magali Kitzmann

Metabolomics Reveals Reduction of Metabolic Oxidation in Women with Polycystic Ovary Syndrome after Pioglitazone-Flutamide-Metformin Polytherapy
Maria Vinaixa, Miguel Angel Rodriguez, Sara Samino, Marta Díaz, Antoni Beltran, Roger Mallol, Cinta Bladé, Lourdes Ibañez, Xavier Correig, Oscar Yanes

Comparison of Dysferlin Expression in Human Skeletal Muscle with That in Monocytes for the Diagnosis of Dysferlin Myopathy
Eduard Gallardo, Noemi de Luna, Jordi Diaz-Manera, Ricardo Rojas-García, Lidia Gonzalez-Quereda, Bàrbara Flix, Antoine de Morrée, Silvère van der Maarel, Isabel Illa

Lyso-GM2 Ganglioside: A Possible Biomarker of Tay-Sachs Disease and Sandhoff Disease
Takashi Kodama, Tadayasu Togawa, Takahiro Tsukimura, Ikuo Kawashima, Kazuhiko Matsuoka, Keisuke Kitakaze, Daisuke Tsuji, Kohji Itoh, Yo-ichi Ishida, Minoru Suzuki, Toshihiro Suzuki, Hitoshi Sakuraba

Chromatin Remodeling, Cell Proliferation and Cell Death in Valproic Acid-Treated HeLa Cells
Marina Barreto Felisbino, Wirla M. S. C. Tamashiro, Maria Luiza S. Mello

Insulin-Like Growth Factor-1 Receptor Is Regulated by microRNA-133 during Skeletal Myogenesis
Mian-Bo Huang, Hui Xu, Shu-Juan Xie, Hui Zhou, Liang-Hu Qu

The Human Nucleolar Protein FTSJ3 Associates with NIP7 and Functions in Pre-rRNA Processing
Luis G. Morello, Patricia P. Coltri, Alexandre J. C. Quaresma, Fernando M. Simabuco, Tereza C. L. Silva, Guramrit Singh, Jeffrey A. Nickerson, Carla C. Oliveira, Melissa J. Moore, Nilson I. T. Zanchin

C-Terminal Di-leucine Motif of Dopamine D1 Receptor Plays an Important Role in Its Plasma Membrane Trafficking
Yan Guo, Pedro A. Jose

Disorder Predictors Also Predict Backbone Dynamics for a Family of Disordered Proteins
Gary W. Daughdrill, Wade M. Borcherds, Hongwei Wu

Plasma Biomarkers for Detecting Hodgkin's Lymphoma in HIV Patients
Susan M. Varnum, Bobbie-Jo M. Webb-Robertson, Nancy A. Hessol, Richard D. Smith, Richard C. Zangar

Genetic Isolation between the Western and Eastern Pacific Populations of Pronghorn Spiny Lobster Panulirus penicillatus
Seinen Chow, Andrew Jeffs, Yoichi Miyake, Kooichi Konishi, Makoto Okazaki, Nobuaki Suzuki, Muhamad F. Abdullah, Hideyuki Imai, Toshie Wakabayasi, Mitsuo Sakai

Regulation of Glucose Homeostasis by KSR1 and MARK2
Paula J. Klutho, Diane L. Costanzo-Garvey, Robert E. Lewis

The ELBA Force Field for Coarse-Grain Modeling of Lipid Membranes
Mario Orsi, Jonathan W. Essex

Quantitative and Rapid DNA Detection by Laser Transmission Spectroscopy
Frank Li, Andrew R. Mahon, Matthew A. Barnes, Jeffery Feder, David M. Lodge, Ching-Ting Hwang, Robert Schafer, Steven T. Ruggiero, Carol E. Tanner

Collagen XXVII Organises the Pericellular Matrix in the Growth Plate
Darren A. Plumb, Laila Ferrara, Tanja Torbica, Lynnette Knowles, Aleksandr Mironov, Karl E. Kadler, Michael D. Briggs, Raymond P. Boot-Handford

The MrCYP52 Cytochrome P450 Monoxygenase Gene of Metarhizium robertsii Is Important for Utilizing Insect Epicuticular Hydrocarbons
Liangcai Lin, Weiguo Fang, Xinggang Liao, Fengqing Wang, Dongzhi Wei, Raymond J. St. Leger

APC/CCdh1-Mediated Degradation of the F-Box Protein NIPA Is Regulated by Its Association with Skp1
Christine von Klitzing, Richard Huss, Anna Lena Illert, Astrid Fröschl, Sabine Wötzel, Christian Peschel, Florian Bassermann, Justus Duyster

Intracranial V. cholerae Sialidase Protects against Excitotoxic Neurodegeneration
Anandh Dhanushkodi, Michael P. McDonald

Crosstalk between Nuclear Factor I-C and Transforming Growth Factor-β1 Signaling Regulates Odontoblast Differentiation and Homeostasis
Dong-Seol Lee, Won-Joon Yoon, Eui Sic Cho, Heung-Joong Kim, Richard M. Gronostajski, Moon-Il Cho, Joo-Cheol Park

Probing the Production of Amidated Peptides following Genetic and Dietary Copper Manipulations
Ping Yin, Danielle Bousquet-Moore, Suresh P. Annangudi, Bruce R. Southey, Richard E. Mains, Betty A. Eipper, Jonathan V. Sweedler

Revisiting G3BP1 as a RasGAP Binding Protein: Sensitization of Tumor Cells to Chemotherapy by the RasGAP 317–326 Sequence Does Not Involve G3BP1
Alessandro Annibaldi, Aline Dousse, Sophie Martin, Jamal Tazi, Christian Widmann

Maternal Periconceptional and Gestational Low Protein Diet Affects Mouse Offspring Growth, Cardiovascular and Adipose Phenotype at 1 Year of Age
Adam J. Watkins, Emma S. Lucas, Adrian Wilkins, Felino R. A. Cagampang, Tom P. Fleming

Detection and Quantification of Citrullinated Chemokines
Eva A. V. Moelants, Jo Van Damme, Paul Proost

Protein Profile Changes during Porcine Oocyte Aging and Effects of Caffeine on Protein Expression Patterns
Guang-Jian Jiang, Ke Wang, De-Qiang Miao, Lei Guo, Yi Hou, Heide Schatten, Qing-Yuan Sun

The Dynamin Chemical Inhibitor Dynasore Impairs Cholesterol Trafficking and Sterol-Sensitive Genes Transcription in Human HeLa Cells and Macrophages
Emmanuelle Girard, Jean Louis Paul, Natalie Fournier, Philippe Beaune, Ludger Johannes, Christophe Lamaze, Benoît Védie

Neonatal Androgenization Exacerbates Alcohol-Induced Liver Injury in Adult Rats, an Effect Abrogated by Estrogen
Whitney M. Ellefson, Ashley M. Lakner, Alicia Hamilton, Iain H. McKillop, Herbert L. Bonkovsky, Nury M. Steuerwald, Yvette M. Huet, Laura W. Schrum

Cholesterol and Lipoprotein Dynamics in a Hibernating Mammal
Jessica P. Otis, Daisy Sahoo, Victor A. Drover, Chi-Liang Eric Yen, Hannah V. Carey

A Chitinase from Aeromonas veronii CD3 with the Potential to Control Myxozoan Disease
Yuchun Liu, Zhigang Zhou, Wei Miao, Yuting Zhang, Yanan Cao, Suxu He, Dongqing Bai, Bin Yao

Niclosamide Suppresses Cancer Cell Growth By Inducing Wnt Co-Receptor LRP6 Degradation and Inhibiting the Wnt/β-Catenin Pathway
Wenyan Lu, Cuihong Lin, Michael J. Roberts, William R. Waud, Gary A. Piazza, Yonghe Li

Differential Phosphorylation of Ribosomal Proteins in Arabidopsis thaliana Plants during Day and Night
Maria V. Turkina, Hanna Klang Årstrand, Alexander V. Vener

De Novo Growth Zone Formation from Fission Yeast Spheroplasts
Felice D. Kelly, Paul Nurse

N-glycans of Human Protein C Inhibitor: Tissue-Specific Expression and Function
Wei Sun, Paola Grassi, Åke Engström, Sanjeewani Sooriyaarachchi, Wimal Ubhayasekera, Julius Hreinsson, Kjell Wånggren, Gary F. Clark, Anne Dell, Sophia Schedin-Weiss

Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families
Lucas Bleicher, Ney Lemke, Richard Charles Garratt

Asymmetric Proteome Equalization of the Skeletal Muscle Proteome Using a Combinatorial Hexapeptide Library
Jenny Rivers, Chris Hughes, Thérèse McKenna, Yvonne Woolerton, Johannes P. C. Vissers, James I. Langridge, Robert J. Beynon

Distinct Characteristics of Circulating Vascular Endothelial Growth Factor-A and C Levels in Human Subjects
Hiromichi Wada, Shuichi Ura, Shuji Kitaoka, Noriko Satoh-Asahara, Takahiro Horie, Koh Ono, Tomohide Takaya, Rieko Takanabe-Mori, Masaharu Akao, Mitsuru Abe, Tatsuya Morimoto, Toshinori Murayama, Masayuki Yokode, Masatoshi Fujita, Akira Shimatsu, Koji Hasegawa

Identification of Eps15 as Antigen Recognized by the Monoclonal Antibodies aa2 and ab52 of the Wuerzburg Hybridoma Library against Drosophila Brain
Partho Halder, Yi-chun Chen, Janine Brauckhoff, Alois Hofbauer, Marie-Christine Dabauvalle, Urs Lewandrowski, Christiane Winkler, Albert Sickmann, Erich Buchner

Circulating and Brain BDNF Levels in Stroke Rats. Relevance to Clinical Studies
Yannick Béjot, Claude Mossiat, Maurice Giroud, Anne Prigent-Tessier, Christine Marie

Binding of Tetracycline and Chlortetracycline to the Enzyme Trypsin: Spectroscopic and Molecular Modeling Investigations
Zhenxing Chi, Rutao Liu, Hongxu Yang, Hengmei Shen, Jing Wang

Antihypertensive Treatment Differentially Affects Vascular Sphingolipid Biology in Spontaneously Hypertensive Rats
Léon J. A. Spijkers, Ben J. A. Janssen, Jelly Nelissen, Merlijn J. P. M. T. Meens, Dayanjan Wijesinghe, Charles E. Chalfant, Jo G. R. De Mey, Astrid E. Alewijnse, Stephan L. M. Peters

Testing Pollen of Single and Stacked Insect-Resistant Bt-Maize on In vitro Reared Honey Bee Larvae
Harmen P. Hendriksma, Stephan Härtel, Ingolf Steffan-Dewenter

Allelic Lineages of the Ficolin Genes (FCNs) Are Passed from Ancestral to Descendant Primates
Tina Hummelshøj, Janna Nissen, Lea Munthe-Fog, Claus Koch, Mads Frost Bertelsen, Peter Garred

In silico Analysis of Conformational Changes Induced by Mutation of Aromatic Binding Residues: Consequences for Drug Binding in the hERG K+ Channel
Kirsten Knape, Tobias Linder, Peter Wolschann, Anton Beyer, Anna Stary-Weinzinger

Murine and Human Myogenic Cells Identified by Elevated Aldehyde Dehydrogenase Activity: Implications for Muscle Regeneration and Repair
Joseph B. Vella, Seth D. Thompson, Mark J. Bucsek, Minjung Song, Johnny Huard

Systematic Drug Repositioning Based on Clinical Side-Effects
Lun Yang, Pankaj Agarwal

Mitragynine Attenuates Withdrawal Syndrome in Morphine-Withdrawn Zebrafish
Beng-Siang Khor, Mohd Fadzly Amar Jamil, Mohamad Ilham Adenan, Alexander Chong Shu-Chien

Structural and Functional Studies of a Bothropic Myotoxin Complexed to Rosmarinic Acid: New Insights into Lys49-PLA2 Inhibition
Juliana I. dos Santos, Fábio F. Cardoso, Andreimar M. Soares, Maeli dal Pai Silva, Márcia Gallacci, Marcos R. M. Fontes

Plasma Biomarkers of Brain Atrophy in Alzheimer's Disease
Madhav Thambisetty, Andrew Simmons, Abdul Hye, James Campbell, Eric Westman, Yi Zhang, Lars-Olof Wahlund, Anna Kinsey, Mirsada Causevic, Richard Killick, Iwona Kloszewska, Patrizia Mecocci, Hilkka Soininen, Magda Tsolaki, Bruno Vellas, Christian Spenger, Simon Lovestone, for the AddNeuroMed consortium

The Plasmodium falciparum Malaria M1 Alanyl Aminopeptidase (PfA-M1): Insights of Catalytic Mechanism and Function from MD Simulations
Peter M. Jones, Mark W. Robinson, John P. Dalton, Anthony M. George

The Endocrine Disruptor Mono-(2-Ethylhexyl) Phthalate Affects the Differentiation of Human Liposarcoma Cells (SW 872)
Enrico Campioli, Amani Batarseh, Jiehan Li, Vassilios Papadopoulos

A Carrier for Non-Covalent Delivery of Functional Beta-Galactosidase and Antibodies against Amyloid Plaques and IgM to the Brain
Gobinda Sarkar, Geoffry L. Curran, Eric Mahlum, Teresa Decklever, Thomas M. Wengenack, Anthony Blahnik, Bridget Hoesley, Val J. Lowe, Joseph F. Poduslo, Robert B. Jenkins

CD9 Tetraspanin Interacts with CD36 on the Surface of Macrophages: A Possible Regulatory Influence on Uptake of Oxidized Low Density Lipoprotein
Wenxin Huang, Maria Febbraio, Roy L. Silverstein

The Nrf1 CNC-bZIP Protein Is Regulated by the Proteasome and Activated by Hypoxia
Nikolai L. Chepelev, Joshua D. Bennitz, Ting Huang, Skye McBride, William G. Willmore

Synergistic Effects of Apigenin and Paclitaxel on Apoptosis of Cancer Cells
Yimiao Xu, Yinqiang Xin, Ying Diao, Changyan Lu, Jin Fu, Lan Luo, Zhimin Yin

Heterologous Expression of Membrane Proteins: Choosing the Appropriate Host
Florent Bernaudat, Annie Frelet-Barrand, Nathalie Pochon, Sébastien Dementin, Patrick Hivin, Sylvain Boutigny, Jean-Baptiste Rioux, Daniel Salvi, Daphné Seigneurin-Berny, Pierre Richaud, Jacques Joyard, David Pignol, Monique Sabaty, Thierry Desnos, Eva Pebay-Peyroula, Elisabeth Darrouzet, Thierry Vernet, Norbert Rolland

Influence of N-Glycosylation on the Morphogenesis and Growth of Paracoccidioides brasiliensis and on the Biological Activities of Yeast Proteins
Fausto Bruno Dos Reis Almeida, Fernanda Caroline Carvalho, Vânia Sammartino Mariano, Ana Claudia Paiva Alegre, Roberto do Nascimento Silva, Ebert Seixas Hanna, Maria Cristina Roque-Barreira

A Network-Based Approach on Elucidating the Multi-Faceted Nature of Chronological Aging in S. cerevisiae
Esra Borklu Yucel, Kutlu O. Ulgen

Multi-Scale Stochastic Simulation of Diffusion-Coupled Agents and Its Application to Cell Culture Simulation
Yishai Shimoni, German Nudelman, Fernand Hayot, Stuart C. Sealfon

hElp3 Directly Modulates the Expression of HSP70 Gene in HeLa Cells via HAT Activity
Fen Li, Jixian Ma, Yu Ma, Yanyan Hu, Shujuan Tian, Richard E. White, Guichun Han

Soluble CD44 Interacts with Intermediate Filament Protein Vimentin on Endothelial Cell Surface
Taavi Päll, Anne Pink, Lagle Kasak, Marina Turkina, Wally Anderson, Andres Valkna, Priit Kogerman

Metabolomic Assessment of Induced and Activated Chemical Defence in the Invasive Red Alga Gracilaria vermiculophylla
Göran M. Nylund, Florian Weinberger, Martin Rempt, Georg Pohnert

Identification of Domains and Amino Acids Essential to the Collagen Galactosyltransferase Activity of GLT25D1
Claire Perrin-Tricaud, Christoph Rutschmann, Thierry Hennet

Novel Patient Cell-Based HTS Assay for Identification of Small Molecules for a Lysosomal Storage Disease
Haifeng Geng, Grace Whiteley, Jameson Ribbens, Wei Zheng, Noel Southall, Xin Hu, Juan J. Marugan, Marc Ferrer, Gustavo H. B. Maegawa

Development of Shuttle Vectors for Transformation of Diverse Rickettsia Species
Nicole Y. Burkhardt, Gerald D. Baldridge, Phillip C. Williamson, Peggy M. Billingsley, Chan C. Heu, Roderick F. Felsheim, Timothy J. Kurtti, Ulrike G. Munderloh

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Biophysics

Structural Analysis of the UBA Domain of X-linked Inhibitor of Apoptosis Protein Reveals Different Surfaces for Ubiquitin-Binding and Self-Association
Man Kit Tse, Sin Kam Hui, Yinhua Yang, Si-Tao Yin, Hong-Yu Hu, Bing Zou, Benjamin Chun Yu Wong, Kong Hung Sze

Insulin-Like Growth Factor-1 Receptor Is Regulated by microRNA-133 during Skeletal Myogenesis
Mian-Bo Huang, Hui Xu, Shu-Juan Xie, Hui Zhou, Liang-Hu Qu

Disorder Predictors Also Predict Backbone Dynamics for a Family of Disordered Proteins
Gary W. Daughdrill, Wade M. Borcherds, Hongwei Wu

Repeated Small Perturbation Approach Reveals Transcriptomic Steady States
Ching-Lung Huang, Wun-Yi Shu, Min-Lung Tsai, Chi-Shiun Chiang, Cheng-Wei Chang, Chiu-Ting Chang, Ian C. Hsu

Detection of Perturbation Phases and Developmental Stages in Organisms from DNA Microarray Time Series Data
Marianne Rooman, Jaroslav Albert, Yves Dehouck, Alexandre Haye

The ELBA Force Field for Coarse-Grain Modeling of Lipid Membranes
Mario Orsi, Jonathan W. Essex

Mechanochemical Modeling of Dynamic Microtubule Growth Involving Sheet-to-Tube Transition
Xiang-Ying Ji, Xi-Qiao Feng

Quantitative and Rapid DNA Detection by Laser Transmission Spectroscopy
Frank Li, Andrew R. Mahon, Matthew A. Barnes, Jeffery Feder, David M. Lodge, Ching-Ting Hwang, Robert Schafer, Steven T. Ruggiero, Carol E. Tanner

Optimal Principle of Bone Structure
Yifang Fan, Yubo Fan, Zhiyu Li, Mushtaq Loan, Changsheng Lv, Zhang Bo

Detection and Quantification of Citrullinated Chemokines
Eva A. V. Moelants, Jo Van Damme, Paul Proost

Synchrotron Radiation X-Ray Microfluorescence Reveals Polarized Distribution of Atomic Elements during Differentiation of Pluripotent Stem Cells
Simone C. Cardoso, Mariana P. Stelling, Bruna S. Paulsen, Stevens K. Rehen

Cyclic Stress at mHz Frequencies Aligns Fibroblasts in Direction of Zero Strain
Uta Faust, Nico Hampe, Wolfgang Rubner, Norbert Kirchgeßner, Sam Safran, Bernd Hoffmann, Rudolf Merkel

Multi-Cellular Logistics of Collective Cell Migration
Masataka Yamao, Honda Naoki, Shin Ishii

Structural and Functional Studies of a Bothropic Myotoxin Complexed to Rosmarinic Acid: New Insights into Lys49-PLA2 Inhibition
Juliana I. dos Santos, Fábio F. Cardoso, Andreimar M. Soares, Maeli dal Pai Silva, Márcia Gallacci, Marcos R. M. Fontes

E-Cadherin Is Transcriptionally Activated via Suppression of ZEB1 Transcriptional Repressor by Small RNA-Mediated Gene Silencing
Minami Mazda, Kenji Nishi, Yuki Naito, Kumiko Ui-Tei

Mutual Information for the Detection of Crush
Peter Harding, Steve Gwynne, Martyn Amos

A Carrier for Non-Covalent Delivery of Functional Beta-Galactosidase and Antibodies against Amyloid Plaques and IgM to the Brain
Gobinda Sarkar, Geoffry L. Curran, Eric Mahlum, Teresa Decklever, Thomas M. Wengenack, Anthony Blahnik, Bridget Hoesley, Val J. Lowe, Joseph F. Poduslo, Robert B. Jenkins

The Nrf1 CNC-bZIP Protein Is Regulated by the Proteasome and Activated by Hypoxia
Nikolai L. Chepelev, Joshua D. Bennitz, Ting Huang, Skye McBride, William G. Willmore

Multi-Scale Stochastic Simulation of Diffusion-Coupled Agents and Its Application to Cell Culture Simulation
Yishai Shimoni, German Nudelman, Fernand Hayot, Stuart C. Sealfon

hElp3 Directly Modulates the Expression of HSP70 Gene in HeLa Cells via HAT Activity
Fen Li, Jixian Ma, Yu Ma, Yanyan Hu, Shujuan Tian, Richard E. White, Guichun Han

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Biotechnology

Cultivation of Human Corneal Endothelial Cells Isolated from Paired Donor Corneas
Gary S. L. Peh, Kah-Peng Toh, Fei-Yi Wu, Donald T. Tan, Jodhbir S. Mehta

Checkpoint Signaling, Base Excision Repair, and PARP Promote Survival of Colon Cancer Cells Treated with 5-Fluorodeoxyuridine but Not 5-Fluorouracil
Liyi Geng, Amelia M. Huehls, Jill M. Wagner, Catherine J. Huntoon, Larry M. Karnitz

Prevalence and Impact of Minority Variant Drug Resistance Mutations in Primary HIV-1 Infection
Joanne D. Stekler, Giovanina M. Ellis, Jacquelyn Carlsson, Braiden Eilers, Sarah Holte, Janine Maenza, Claire E. Stevens, Ann C. Collier, Lisa M. Frenkel

Quantitative and Rapid DNA Detection by Laser Transmission Spectroscopy
Frank Li, Andrew R. Mahon, Matthew A. Barnes, Jeffery Feder, David M. Lodge, Ching-Ting Hwang, Robert Schafer, Steven T. Ruggiero, Carol E. Tanner

Efficient Culturing and Genetic Manipulation of Human Pluripotent Stem Cells
Robert T. Schinzel, Tim Ahfeldt, Frank H. Lau, Youn-Kyoung Lee, Alicia Cowley, Tony Shen, Derek Peters, David H. Lum, Chad A. Cowan

Optimal Principle of Bone Structure
Yifang Fan, Yubo Fan, Zhiyu Li, Mushtaq Loan, Changsheng Lv, Zhang Bo

A Chitinase from Aeromonas veronii CD3 with the Potential to Control Myxozoan Disease
Yuchun Liu, Zhigang Zhou, Wei Miao, Yuting Zhang, Yanan Cao, Suxu He, Dongqing Bai, Bin Yao

Omentum-Wrapped Scaffold with Longitudinally Oriented Micro-Channels Promotes Axonal Regeneration and Motor Functional Recovery in Rats
Yong-Guang Zhang, Jing-Hui Huang, Xue-Yu Hu, Qing-Song Sheng, Wei Zhao, Zhuo-Jing Luo

Niclosamide Suppresses Cancer Cell Growth By Inducing Wnt Co-Receptor LRP6 Degradation and Inhibiting the Wnt/β-Catenin Pathway
Wenyan Lu, Cuihong Lin, Michael J. Roberts, William R. Waud, Gary A. Piazza, Yonghe Li

Insights into Hypoxic Systemic Responses Based on Analyses of Transcriptional Regulation in Arabidopsis
Fu-Chiun Hsu, Mei-Yi Chou, Hsiao-Ping Peng, Shu-Jen Chou, Ming-Che Shih

Testing Pollen of Single and Stacked Insect-Resistant Bt-Maize on In vitro Reared Honey Bee Larvae
Harmen P. Hendriksma, Stephan Härtel, Ingolf Steffan-Dewenter

Transcriptome Analysis of the Oriental Fruit Fly (Bactrocera dorsalis)
Guang-Mao Shen, Wei Dou, Jin-Zhi Niu, Hong-Bo Jiang, Wen-Jia Yang, Fu-Xian Jia, Fei Hu, Lin Cong, Jin-Jun Wang

Systematic Drug Repositioning Based on Clinical Side-Effects
Lun Yang, Pankaj Agarwal

Multiplexed Quantum Dot Labeling of Activated c-Met Signaling in Castration-Resistant Human Prostate Cancer
Peizhen Hu, Gina C.-Y. Chu, Guodong Zhu, Hua Yang, Daniel Luthringer, Gail Prins, Fouad Habib, Yuzhuo Wang, Ruoxiang Wang, Leland W. K. Chung, Haiyen E. Zhau

Heterologous Expression of Membrane Proteins: Choosing the Appropriate Host
Florent Bernaudat, Annie Frelet-Barrand, Nathalie Pochon, Sébastien Dementin, Patrick Hivin, Sylvain Boutigny, Jean-Baptiste Rioux, Daniel Salvi, Daphné Seigneurin-Berny, Pierre Richaud, Jacques Joyard, David Pignol, Monique Sabaty, Thierry Desnos, Eva Pebay-Peyroula, Elisabeth Darrouzet, Thierry Vernet, Norbert Rolland

Estimation of Individual Muscle Force Using Elastography
Killian Bouillard, Antoine Nordez, François Hug

Development of Shuttle Vectors for Transformation of Diverse Rickettsia Species
Nicole Y. Burkhardt, Gerald D. Baldridge, Phillip C. Williamson, Peggy M. Billingsley, Chan C. Heu, Roderick F. Felsheim, Timothy J. Kurtti, Ulrike G. Munderloh

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Cell Biology

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, Leo Izzi, Giovanni Camussi, Marco Forni

Cultivation of Human Corneal Endothelial Cells Isolated from Paired Donor Corneas
Gary S. L. Peh, Kah-Peng Toh, Fei-Yi Wu, Donald T. Tan, Jodhbir S. Mehta

Farnesol-Induced Apoptosis in Candida albicans Is Mediated by Cdr1-p Extrusion and Depletion of Intracellular Glutathione
Jingsong Zhu, Bastiaan P. Krom, Dominique Sanglard, Chaidan Intapa, Clinton C. Dawson, Brian M. Peters, Mark E. Shirtliff, Mary Ann Jabra-Rizk

Increased FAT/CD36 Cycling and Lipid Accumulation in Myotubes Derived from Obese Type 2 Diabetic Patients
Celine Aguer, Marc Foretz, Louise Lantier, Sophie Hebrard, Benoit Viollet, Jacques Mercier, Magali Kitzmann

A Honey Bee Hexamerin, HEX 70a, Is Likely to Play an Intranuclear Role in Developing and Mature Ovarioles and Testioles
Juliana R. Martins, Lucas Anhezini, Rodrigo P. Dallacqua, Zilá L. P. Simões, Márcia M. G. Bitondi

MicroRNA-449a Overexpression, Reduced NOTCH1 Signals and Scarce Goblet Cells Characterize the Small Intestine of Celiac Patients
Marina Capuano, Laura Iaffaldano, Nadia Tinto, Donatella Montanaro, Valentina Capobianco, Valentina Izzo, Francesca Tucci, Giancarlo Troncone, Luigi Greco, Lucia Sacchetti

Chromatin Remodeling, Cell Proliferation and Cell Death in Valproic Acid-Treated HeLa Cells
Marina Barreto Felisbino, Wirla M. S. C. Tamashiro, Maria Luiza S. Mello

Insulin-Like Growth Factor-1 Receptor Is Regulated by microRNA-133 during Skeletal Myogenesis
Mian-Bo Huang, Hui Xu, Shu-Juan Xie, Hui Zhou, Liang-Hu Qu

The Human Nucleolar Protein FTSJ3 Associates with NIP7 and Functions in Pre-rRNA Processing
Luis G. Morello, Patricia P. Coltri, Alexandre J. C. Quaresma, Fernando M. Simabuco, Tereza C. L. Silva, Guramrit Singh, Jeffrey A. Nickerson, Carla C. Oliveira, Melissa J. Moore, Nilson I. T. Zanchin

Sca-1+ Cardiac Stem Cells Mediate Acute Cardioprotection via Paracrine Factor SDF-1 following Myocardial Ischemia/Reperfusion
Chunyan Huang, Hongmei Gu, Qing Yu, Mariuxi C. Manukyan, Jeffrey A. Poynter, Meijing Wang

Metadherin Mediates Lipopolysaccharide-Induced Migration and Invasion of Breast Cancer Cells
Yuhan Zhao, Xiaoli Kong, Xiaoyan Li, Shi Yan, Cunzhong Yuan, Wenwei Hu, Qifeng Yang

The ELBA Force Field for Coarse-Grain Modeling of Lipid Membranes
Mario Orsi, Jonathan W. Essex

Collagen XXVII Organises the Pericellular Matrix in the Growth Plate
Darren A. Plumb, Laila Ferrara, Tanja Torbica, Lynnette Knowles, Aleksandr Mironov, Karl E. Kadler, Michael D. Briggs, Raymond P. Boot-Handford

Extracting Fluorescent Reporter Time Courses of Cell Lineages from High-Throughput Microscopy at Low Temporal Resolution
Mike J. Downey, Danuta M. Jeziorska, Sascha Ott, T. Katherine Tamai, Georgy Koentges, Keith W. Vance, Till Bretschneider

Crosstalk between Nuclear Factor I-C and Transforming Growth Factor-β1 Signaling Regulates Odontoblast Differentiation and Homeostasis
Dong-Seol Lee, Won-Joon Yoon, Eui Sic Cho, Heung-Joong Kim, Richard M. Gronostajski, Moon-Il Cho, Joo-Cheol Park

Defects of Protein Phosphatase 2A Causes Corticosteroid Insensitivity in Severe Asthma
Yoshiki Kobayashi, Nicolas Mercado, Peter J. Barnes, Kazuhiro Ito

Revisiting G3BP1 as a RasGAP Binding Protein: Sensitization of Tumor Cells to Chemotherapy by the RasGAP 317–326 Sequence Does Not Involve G3BP1
Alessandro Annibaldi, Aline Dousse, Sophie Martin, Jamal Tazi, Christian Widmann

RANKL Is a Downstream Mediator for Insulin-Induced Osteoblastic Differentiation of Vascular Smooth Muscle Cells
Ling-Qing Yuan, Jia-Hua Zhu, Hua-Wen Wang, Qiu-Hua Liang, Hui Xie, Xian-Ping Wu, Hua Zhou, Rong-Rong Cui, Zhi-Feng Sheng, Hou-De Zhou, Xiao Zhu, Guan-Ying Liu, You-Shuo Liu, Er-Yuan Liao

Granulin-Epithelin Precursor Is an Oncofetal Protein Defining Hepatic Cancer Stem Cells
Phyllis Fung Yi Cheung, Christine Kei Chin Cheng, Nicholas Chun Lim Wong, Jenny Chung Yee Ho, Chi Wai Yip, Vincent Chi Hang Lui, Annie Nga Yin Cheung, Sheung Tat Fan, Siu Tim Cheung

clag9 Is Not Essential for PfEMP1 Surface Expression in Non-Cytoadherent Plasmodium falciparum Parasites with a Chromosome 9 Deletion
Adéla Nacer, Emeric Roux, Sébastien Pomel, Christine Scheidig-Benatar, Hiroshi Sakamoto, Frank Lafont, Artur Scherf, Denise Mattei

The Dynamin Chemical Inhibitor Dynasore Impairs Cholesterol Trafficking and Sterol-Sensitive Genes Transcription in Human HeLa Cells and Macrophages
Emmanuelle Girard, Jean Louis Paul, Natalie Fournier, Philippe Beaune, Ludger Johannes, Christophe Lamaze, Benoît Védie

Neutrophil Extracellular Trap Formation Is Associated with IL-1β and Autophagy-Related Signaling in Gout
Ioannis Mitroulis, Konstantinos Kambas, Akrivi Chrysanthopoulou, Panagiotis Skendros, Eirini Apostolidou, Ioannis Kourtzelis, Georgios I. Drosos, Dimitrios T. Boumpas, Konstantinos Ritis

Development of Posterior Hypothalamic Neurons Enlightens a Switch in the Prosencephalic Basic Plan
Sophie Croizier, Clotilde Amiot, Xiaoping Chen, Françoise Presse, Jean-Louis Nahon, Jane Y. Wu, Dominique Fellmann, Pierre-Yves Risold

The Combination of Early and Rapid Type I IFN, IL-1α, and IL-1β Production Are Essential Mediators of RNA-Like Adjuvant Driven CD4+ Th1 Responses
Rachel F. Madera, Jennifer P. Wang, Daniel H. Libraty

Single Cell Analysis Facilitates Staging of Blimp1-Dependent Primordial Germ Cells Derived from Mouse Embryonic Stem Cells
John J. Vincent, Ziwei Li, Serena A. Lee, Xian Liu, Marisabel O. Etter, Silvia V. Diaz-Perez, Sara K. Taylor, Sofia Gkountela, Anne G. Lindgren, Amander T. Clark

Differential Phosphorylation of Ribosomal Proteins in Arabidopsis thaliana Plants during Day and Night
Maria V. Turkina, Hanna Klang Årstrand, Alexander V. Vener

De Novo Growth Zone Formation from Fission Yeast Spheroplasts
Felice D. Kelly, Paul Nurse

Cyclic Stress at mHz Frequencies Aligns Fibroblasts in Direction of Zero Strain
Uta Faust, Nico Hampe, Wolfgang Rubner, Norbert Kirchgeßner, Sam Safran, Bernd Hoffmann, Rudolf Merkel

Murine and Human Myogenic Cells Identified by Elevated Aldehyde Dehydrogenase Activity: Implications for Muscle Regeneration and Repair
Joseph B. Vella, Seth D. Thompson, Mark J. Bucsek, Minjung Song, Johnny Huard

Innate Structure of DNA Foci Restricts the Mixing of DNA from Different Chromosome Territories
Pedro Olivares-Chauvet, Dorota Fennessy, Dean A. Jackson, Apolinar Maya-Mendoza

E-Cadherin Is Transcriptionally Activated via Suppression of ZEB1 Transcriptional Repressor by Small RNA-Mediated Gene Silencing
Minami Mazda, Kenji Nishi, Yuki Naito, Kumiko Ui-Tei

Reduced Light Response of Neuronal Firing Activity in the Suprachiasmatic Nucleus and Optic Nerve of Cryptochrome-Deficient Mice
Takahiro J. Nakamura, Shizufumi Ebihara, Kazuyuki Shinohara

Selective Cytotoxicity against Human Osteosarcoma Cells by a Novel Synthetic C-1 Analogue of 7-Deoxypancratistatin Is Potentiated by Curcumin
Dennis Ma, Phillip Tremblay, Kevinjeet Mahngar, Jonathan Collins, Tomas Hudlicky, Siyaram Pandey

EB1 Is Required for Spindle Symmetry in Mammalian Mitosis
Anke Brüning-Richardson, Kelly J. Langford, Peter Ruane, Tracy Lee, Jon M. Askham, Ewan E. Morrison

Identification of Surprisingly Diverse Type IV Pili, across a Broad Range of Gram-Positive Bacteria
Saheed Imam, Zhongqiang Chen, David S. Roos, Mechthild Pohlschröder

The Nrf1 CNC-bZIP Protein Is Regulated by the Proteasome and Activated by Hypoxia
Nikolai L. Chepelev, Joshua D. Bennitz, Ting Huang, Skye McBride, William G. Willmore

Synergistic Effects of Apigenin and Paclitaxel on Apoptosis of Cancer Cells
Yimiao Xu, Yinqiang Xin, Ying Diao, Changyan Lu, Jin Fu, Lan Luo, Zhimin Yin

Effects of Simulated Microgravity on Embryonic Stem Cells
Yulan Wang, Lili An, Yuanda Jiang, Haiying Hang

Sexual Selection Halts the Relaxation of Protamine 2 among Rodents
Lena Lüke, Alberto Vicens, Francois Serra, Juan Jose Luque-Larena, Hernán Dopazo, Eduardo R. S. Roldan, Montserrat Gomendio

A Network-Based Approach on Elucidating the Multi-Faceted Nature of Chronological Aging in S. cerevisiae
Esra Borklu Yucel, Kutlu O. Ulgen

Multi-Scale Stochastic Simulation of Diffusion-Coupled Agents and Its Application to Cell Culture Simulation
Yishai Shimoni, German Nudelman, Fernand Hayot, Stuart C. Sealfon

Soluble CD44 Interacts with Intermediate Filament Protein Vimentin on Endothelial Cell Surface
Taavi Päll, Anne Pink, Lagle Kasak, Marina Turkina, Wally Anderson, Andres Valkna, Priit Kogerman

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Chemistry

Metabolomics Reveals Reduction of Metabolic Oxidation in Women with Polycystic Ovary Syndrome after Pioglitazone-Flutamide-Metformin Polytherapy
Maria Vinaixa, Miguel Angel Rodriguez, Sara Samino, Marta Díaz, Antoni Beltran, Roger Mallol, Cinta Bladé, Lourdes Ibañez, Xavier Correig, Oscar Yanes

The ELBA Force Field for Coarse-Grain Modeling of Lipid Membranes
Mario Orsi, Jonathan W. Essex

High-Capacity Conductive Nanocellulose Paper Sheets for Electrochemically Controlled Extraction of DNA Oligomers
Aamir Razaq, Gustav Nyström, Maria Strømme, Albert Mihranyan, Leif Nyholm

A Fly in the Ointment: Evaluation of Traditional Use of Plants to Repel and Kill Blowfly Larvae in Fermented Fish
Hugo J. de Boer, Chanda Vongsombath, Jos Käfer

The MrCYP52 Cytochrome P450 Monoxygenase Gene of Metarhizium robertsii Is Important for Utilizing Insect Epicuticular Hydrocarbons
Liangcai Lin, Weiguo Fang, Xinggang Liao, Fengqing Wang, Dongzhi Wei, Raymond J. St. Leger

Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families
Lucas Bleicher, Ney Lemke, Richard Charles Garratt

Asymmetric Proteome Equalization of the Skeletal Muscle Proteome Using a Combinatorial Hexapeptide Library
Jenny Rivers, Chris Hughes, Thérèse McKenna, Yvonne Woolerton, Johannes P. C. Vissers, James I. Langridge, Robert J. Beynon

In silico Analysis of Conformational Changes Induced by Mutation of Aromatic Binding Residues: Consequences for Drug Binding in the hERG K+ Channel
Kirsten Knape, Tobias Linder, Peter Wolschann, Anton Beyer, Anna Stary-Weinzinger

Systematic Drug Repositioning Based on Clinical Side-Effects
Lun Yang, Pankaj Agarwal

Icariin and its Derivative Icariside II Extend Healthspan via Insulin/IGF-1 Pathway in C. elegans
Wai-Jiao Cai, Jian-Hua Huang, Su-Qin Zhang, Bin Wu, Pankaj Kapahi, Xin-Min Zhang, Zi-Yin Shen

Metabolomic Assessment of Induced and Activated Chemical Defence in the Invasive Red Alga Gracilaria vermiculophylla
Göran M. Nylund, Florian Weinberger, Martin Rempt, Georg Pohnert

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Computational Biology

Structural Analysis of the UBA Domain of X-linked Inhibitor of Apoptosis Protein Reveals Different Surfaces for Ubiquitin-Binding and Self-Association
Man Kit Tse, Sin Kam Hui, Yinhua Yang, Si-Tao Yin, Hong-Yu Hu, Bing Zou, Benjamin Chun Yu Wong, Kong Hung Sze

Catastrophic Floods May Pave the Way for Increased Genetic Diversity in Endemic Artesian Spring Snail Populations
Jessica Worthington Wilmer, Lynde Murray, Ché Elkin, Chris Wilcox, Darren Niejalke, Hugh Possingham

Shortening of Subjective Visual Intervals Followed by Repetitive Stimulation
Fuminori Ono, Shigeru Kitazawa

Differences in Genotype and Virulence among Four Multidrug-Resistant Streptococcus pneumoniae Isolates Belonging to the PMEN1 Clone
N. Luisa Hiller, Rory A. Eutsey, Evan Powell, Joshua P. Earl, Benjamin Janto, Darren P. Martin, Suzanne Dawid, Azad Ahmed, Mark J. Longwell, Margaret E. Dahlgren, Suzanne Ezzo, Herve Tettelin, Sean C. Daugherty, Timothy J. Mitchell, Todd A. Hillman, Farrel J. Buchinsky, Alexander Tomasz, Herminia de Lencastre, Raquel Sá-Leão, J. Christopher Post, Fen Z. Hu, Garth D. Ehrlich

Autoantibody Signature Differentiates Wilms Tumor Patients from Neuroblastoma Patients
Jana Schmitt, Andreas Keller, Nasenien Nourkami-Tutdibi, Sabrina Heisel, Nunja Habel, Petra Leidinger, Nicole Ludwig, Manfred Gessler, Norbert Graf, Frank Berthold, Hans-Peter Lenhof, Eckart Meese

Quantitative Field Testing Rotylenchulus reniformis DNA from Metagenomic Samples Isolated Directly from Soil
Kurt Showmaker, Gary W. Lawrence, Shien Lu, Clarissa Balbalian, Vincent P. Klink

MicroRNA-449a Overexpression, Reduced NOTCH1 Signals and Scarce Goblet Cells Characterize the Small Intestine of Celiac Patients
Marina Capuano, Laura Iaffaldano, Nadia Tinto, Donatella Montanaro, Valentina Capobianco, Valentina Izzo, Francesca Tucci, Giancarlo Troncone, Luigi Greco, Lucia Sacchetti

Novel Positive-Sense, Single-Stranded RNA (+ssRNA) Virus with Di-Cistronic Genome from Intestinal Content of Freshwater Carp (Cyprinus carpio)
Ákos Boros, Péter Pankovics, Peter Simmonds, Gábor Reuter

Disorder Predictors Also Predict Backbone Dynamics for a Family of Disordered Proteins
Gary W. Daughdrill, Wade M. Borcherds, Hongwei Wu

Repeated Small Perturbation Approach Reveals Transcriptomic Steady States
Ching-Lung Huang, Wun-Yi Shu, Min-Lung Tsai, Chi-Shiun Chiang, Cheng-Wei Chang, Chiu-Ting Chang, Ian C. Hsu

Genetic Isolation between the Western and Eastern Pacific Populations of Pronghorn Spiny Lobster Panulirus penicillatus
Seinen Chow, Andrew Jeffs, Yoichi Miyake, Kooichi Konishi, Makoto Okazaki, Nobuaki Suzuki, Muhamad F. Abdullah, Hideyuki Imai, Toshie Wakabayasi, Mitsuo Sakai

Analytical Processing of Binary Mixture Information by Olfactory Bulb Glomeruli
Max L. Fletcher

Detection of Perturbation Phases and Developmental Stages in Organisms from DNA Microarray Time Series Data
Marianne Rooman, Jaroslav Albert, Yves Dehouck, Alexandre Haye

A Dominant Negative Zebrafish Ahr2 Partially Protects Developing Zebrafish from Dioxin Toxicity
Kevin A. Lanham, Amy L. Prasch, Kasia M. Weina, Richard E. Peterson, Warren Heideman

Simulation of Postsynaptic Glutamate Receptors Reveals Critical Features of Glutamatergic Transmission
Renaud Greget, Fabien Pernot, Jean-Marie C. Bouteiller, Viviane Ghaderi, Sushmita Allam, Anne Florence Keller, Nicolas Ambert, Arnaud Legendre, Merdan Sarmis, Olivier Haeberle, Michel Faupel, Serge Bischoff, Theodore W. Berger, Michel Baudry

The ELBA Force Field for Coarse-Grain Modeling of Lipid Membranes
Mario Orsi, Jonathan W. Essex

Suppression and Regression of Choroidal Neovascularization in Mice by a Novel CCR2 Antagonist, INCB3344
Ping Xie, Motohiro Kamei, Mihoko Suzuki, Nagakazu Matsumura, Kentaro Nishida, Susumu Sakimoto, Hirokazu Sakaguchi, Kohji Nishida

Deep Sequencing Whole Transcriptome Exploration of the σE Regulon in Neisseria meningitidis
Robert Antonius Gerhardus Huis in 't Veld, Antonius Marcellinus Willemsen, Antonius Hubertus Cornelis van Kampen, Edward John Bradley, Frank Baas, Yvonne Pannekoek, Arie van der Ende

Mechanochemical Modeling of Dynamic Microtubule Growth Involving Sheet-to-Tube Transition
Xiang-Ying Ji, Xi-Qiao Feng

High-Resolution Melting Genotyping of Enterococcus faecium Based on Multilocus Sequence Typing Derived Single Nucleotide Polymorphisms
Steven Y. C. Tong, Shirley Xie, Leisha J. Richardson, Susan A. Ballard, Farshid Dakh, Elizabeth A. Grabsch, M. Lindsay Grayson, Benjamin P. Howden, Paul D. R. Johnson, Philip M. Giffard

Conditional Gene Expression in Mycobacterium abscessus
Mélanie Cortes, Anil Kumar Singh, Jean-Marc Reyrat, Jean-Louis Gaillard, Xavier Nassif, Jean-Louis Herrmann

Defects of Protein Phosphatase 2A Causes Corticosteroid Insensitivity in Severe Asthma
Yoshiki Kobayashi, Nicolas Mercado, Peter J. Barnes, Kazuhiro Ito

A Case Control Association Study and Cognitive Function Analysis of Neuropilin and Tolloid-Like 1 Gene and Schizophrenia in the Japanese Population
Masahiro Banno, Takayoshi Koide, Branko Aleksic, Kazuo Yamada, Tsutomu Kikuchi, Kunihiro Kohmura, Yasunori Adachi, Naoko Kawano, Itaru Kushima, Masashi Ikeda, Toshiya Inada, Takeo Yoshikawa, Nakao Iwata, Norio Ozaki

The Discovery of Putative Urine Markers for the Specific Detection of Prostate Tumor by Integrative Mining of Public Genomic Profiles
Min Chen, Kai Wang, Liang Zhang, Cheng Li, Yongliang Yang

Large-Scale Screening of a Targeted Enterococcus faecalis Mutant Library Identifies Envelope Fitness Factors
Lionel Rigottier-Gois, Adriana Alberti, Armel Houel, Jean-François Taly, Philippe Palcy, Janet Manson, Daniela Pinto, Renata C. Matos, Laura Carrilero, Natalia Montero, Muhammad Tariq, Harma Karsens, Christian Repp, Andrea Kropec, Aurélie Budin-Verneuil, Abdellah Benachour, Nicolas Sauvageot, Alain Bizzini, Michael S. Gilmore, Philippe Bessières, Jan Kok, Johannes Huebner, Fatima Lopes, Bruno Gonzalez-Zorn, Axel Hartke, Pascale Serror

Gentle Masking of Low-Complexity Sequences Improves Homology Search
Martin C. Frith

Insights into Hypoxic Systemic Responses Based on Analyses of Transcriptional Regulation in Arabidopsis
Fu-Chiun Hsu, Mei-Yi Chou, Hsiao-Ping Peng, Shu-Jen Chou, Ming-Che Shih

Using Amino Acid Correlation and Community Detection Algorithms to Identify Functional Determinants in Protein Families
Lucas Bleicher, Ney Lemke, Richard Charles Garratt

Allelic Lineages of the Ficolin Genes (FCNs) Are Passed from Ancestral to Descendant Primates
Tina Hummelshøj, Janna Nissen, Lea Munthe-Fog, Claus Koch, Mads Frost Bertelsen, Peter Garred

miR451 and AMPK Mutual Antagonism in Glioma Cell Migration and Proliferation: A Mathematical Model
Yangjin Kim, Soyeon Roh, Sean Lawler, Avner Friedman

Comparison of Strategies to Detect Epistasis from eQTL Data
Karen Kapur, Thierry Schüpbach, Ioannis Xenarios, Zoltán Kutalik, Sven Bergmann

Assessment of Inactivating Stop Codon Mutations in Forty Saccharomyces cerevisiae Strains: Implications for [PSI+] Prion- Mediated Phenotypes
David A. Fitzpatrick, Jennifer O'Brien, Ciara Moran, Naushaba Hasin, Elaine Kenny, Paul Cormican, Amy Gates, Derek W. Morris, Gary W. Jones

In silico Analysis of Conformational Changes Induced by Mutation of Aromatic Binding Residues: Consequences for Drug Binding in the hERG K+ Channel
Kirsten Knape, Tobias Linder, Peter Wolschann, Anton Beyer, Anna Stary-Weinzinger

ACSL6 Is Associated with the Number of Cigarettes Smoked and Its Expression Is Altered by Chronic Nicotine Exposure
Jingchun Chen, Darlene H. Brunzell, Kia Jackson, Andrew van der Vaart, Jennie Z. Ma, Thomas J. Payne, Richard Sherva, Lindsay A. Farrer, Pablo Gejman, Douglas F. Levinson, Peter Holmans, Steven H. Aggen, Imad Damaj, Po-Hsiu Kuo, Bradley T. Webb, Raymond Anton, Henry R. Kranzler, Joel Gelernter, Ming D. Li, Kenneth S. Kendler, Xiangning Chen

Transcriptome Analysis of the Oriental Fruit Fly (Bactrocera dorsalis)
Guang-Mao Shen, Wei Dou, Jin-Zhi Niu, Hong-Bo Jiang, Wen-Jia Yang, Fu-Xian Jia, Fei Hu, Lin Cong, Jin-Jun Wang

Comparative Genomics of the Anopheline Glutathione S-Transferase Epsilon Cluster
Constância Ayres, Pie Müller, Naomi Dyer, Craig Wilding, Daniel Rigden, Martin Donnelly

Analysis of Inducible Nitric Oxide Synthase Gene Polymorphisms in Vitiligo in Han Chinese People
Ying Zhang, Chunying Li, Kai Li, Ling Liu, Zhe Jian, Tianwen Gao

Multi-Cellular Logistics of Collective Cell Migration
Masataka Yamao, Honda Naoki, Shin Ishii

Systematic Drug Repositioning Based on Clinical Side-Effects
Lun Yang, Pankaj Agarwal

Health Newscasts for Increasing Influenza Vaccination Coverage: An Inductive Reasoning Game Approach
Romulus Breban

A Deep Insight into the Sialotranscriptome of the Gulf Coast Tick, Amblyomma maculatum
Shahid Karim, Parul Singh, José M. C. Ribeiro

The Plasmodium falciparum Malaria M1 Alanyl Aminopeptidase (PfA-M1): Insights of Catalytic Mechanism and Function from MD Simulations
Peter M. Jones, Mark W. Robinson, John P. Dalton, Anthony M. George

Common Variation in Vitamin D Pathway Genes Predicts Circulating 25-Hydroxyvitamin D Levels among African Americans
Lisa B. Signorello, Jiajun Shi, Qiuyin Cai, Wei Zheng, Scott M. Williams, Jirong Long, Sarah S. Cohen, Guoliang Li, Bruce W. Hollis, Jeffrey R. Smith, William J. Blot

Multiplexed Quantum Dot Labeling of Activated c-Met Signaling in Castration-Resistant Human Prostate Cancer
Peizhen Hu, Gina C.-Y. Chu, Guodong Zhu, Hua Yang, Daniel Luthringer, Gail Prins, Fouad Habib, Yuzhuo Wang, Ruoxiang Wang, Leland W. K. Chung, Haiyen E. Zhau

E-Cadherin Is Transcriptionally Activated via Suppression of ZEB1 Transcriptional Repressor by Small RNA-Mediated Gene Silencing
Minami Mazda, Kenji Nishi, Yuki Naito, Kumiko Ui-Tei

Mutual Information for the Detection of Crush
Peter Harding, Steve Gwynne, Martyn Amos

Accounting for Population Stratification in Practice: A Comparison of the Main Strategies Dedicated to Genome-Wide Association Studies
Matthieu Bouaziz, Christophe Ambroise, Mickael Guedj

A Viral Discovery Methodology for Clinical Biopsy Samples Utilising Massively Parallel Next Generation Sequencing
Gordon M. Daly, Nick Bexfield, Judith Heaney, Sam Stubbs, Antonia P. Mayer, Anne Palser, Paul Kellam, Nizar Drou, Mario Caccamo, Laurence Tiley, Graeme J. M. Alexander, William Bernal, Jonathan L. Heeney

Identification of Surprisingly Diverse Type IV Pili, across a Broad Range of Gram-Positive Bacteria
Saheed Imam, Zhongqiang Chen, David S. Roos, Mechthild Pohlschröder

Bacterial Niche-Specific Genome Expansion Is Coupled with Highly Frequent Gene Disruptions in Deep-Sea Sediments
Yong Wang, Jiang Ke Yang, On On Lee, Tie Gang Li, Abdulaziz Al-Suwailem, Antoine Danchin, Pei-Yuan Qian

Special Agents Can Promote Cooperation in the Population
Xin Wang, Jing Han, Huawei Han

Estimation of Individual Muscle Force Using Elastography
Killian Bouillard, Antoine Nordez, François Hug

A Network-Based Approach on Elucidating the Multi-Faceted Nature of Chronological Aging in S. cerevisiae
Esra Borklu Yucel, Kutlu O. Ulgen

Multi-Scale Stochastic Simulation of Diffusion-Coupled Agents and Its Application to Cell Culture Simulation
Yishai Shimoni, German Nudelman, Fernand Hayot, Stuart C. Sealfon

hElp3 Directly Modulates the Expression of HSP70 Gene in HeLa Cells via HAT Activity
Fen Li, Jixian Ma, Yu Ma, Yanyan Hu, Shujuan Tian, Richard E. White, Guichun Han

Adults' Awareness of Faces Follows Newborns' Looking Preferences
Timo Stein, Marius V. Peelen, Philipp Sterzer

Identification of Sequence Variants in Genetic Disease-Causing Genes Using Targeted Next-Generation Sequencing
Xiaoming Wei, Xiangchun Ju, Xin Yi, Qian Zhu, Ning Qu, Tengfei Liu, Yang Chen, Hui Jiang, Guanghui Yang, Ruan Zhen, Zhangzhang Lan, Ming Qi, Jinming Wang, Yi Yang, Yuxing Chu, Xiaoyan Li, Yanfang Guang, Jian Huang

Development of Shuttle Vectors for Transformation of Diverse Rickettsia Species
Nicole Y. Burkhardt, Gerald D. Baldridge, Phillip C. Williamson, Peggy M. Billingsley, Chan C. Heu, Roderick F. Felsheim, Timothy J. Kurtti, Ulrike G. Munderloh

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Computer Science

Autoantibody Signature Differentiates Wilms Tumor Patients from Neuroblastoma Patients
Jana Schmitt, Andreas Keller, Nasenien Nourkami-Tutdibi, Sabrina Heisel, Nunja Habel, Petra Leidinger, Nicole Ludwig, Manfred Gessler, Norbert Graf, Frank Berthold, Hans-Peter Lenhof, Eckart Meese

Network Homophily and the Evolution of the Pay-It-Forward Reciprocity
Yen-Sheng Chiang, Nobuyuki Takahashi

Disorder Predictors Also Predict Backbone Dynamics for a Family of Disordered Proteins
Gary W. Daughdrill, Wade M. Borcherds, Hongwei Wu

Mechanochemical Modeling of Dynamic Microtubule Growth Involving Sheet-to-Tube Transition
Xiang-Ying Ji, Xi-Qiao Feng

Mutual Information for the Detection of Crush
Peter Harding, Steve Gwynne, Martyn Amos

Multi-Scale Stochastic Simulation of Diffusion-Coupled Agents and Its Application to Cell Culture Simulation
Yishai Shimoni, German Nudelman, Fernand Hayot, Stuart C. Sealfon

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Dermatology

Analysis of Inducible Nitric Oxide Synthase Gene Polymorphisms in Vitiligo in Han Chinese People
Ying Zhang, Chunying Li, Kai Li, Ling Liu, Zhe Jian, Tianwen Gao

Intratumoral Injection of Propionibacterium acnes Suppresses Malignant Melanoma by Enhancing Th1 Immune Responses
Kenshiro Tsuda, Keiichi Yamanaka, Wang Linan, Yoshihiro Miyahara, Tomoko Akeda, Takehisa Nakanishi, Hiroshi Kitagawa, Masato Kakeda, Ichiro Kurokawa, Hiroshi Shiku, Esteban C. Gabazza, Hitoshi Mizutani

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Developmental Biology

Differentiation of Mesenchymal Stem Cells Derived from Pancreatic Islets and Bone Marrow into Islet-Like Cell Phenotype
Cristina Zanini, Stefania Bruno, Giorgia Mandili, Denisa Baci, Francesco Cerutti, Giovanna Cenacchi, Leo Izzi, Giovanni Camussi, Marco Forni

Early Life Events Carry Over to Influence Pre-Migratory Condition in a Free-Living Songbird
Greg W. Mitchell, Christopher G. Guglielmo, Nathaniel T. Wheelwright, Corey R. Freeman-Gallant, D. Ryan Norris

Increased FAT/CD36 Cycling and Lipid Accumulation in Myotubes Derived from Obese Type 2 Diabetic Patients
Celine Aguer, Marc Foretz, Louise Lantier, Sophie Hebrard, Benoit Viollet, Jacques Mercier, Magali Kitzmann

A Honey Bee Hexamerin, HEX 70a, Is Likely to Play an Intranuclear Role in Developing and Mature Ovarioles and Testioles
Juliana R. Martins, Lucas Anhezini, Rodrigo P. Dallacqua, Zilá L. P. Simões, Márcia M. G. Bitondi

Transcriptional Response of Zebrafish Embryos Exposed to Neurotoxic Compounds Reveals a Muscle Activity Dependent hspb11 Expression
Nils Klüver, Lixin Yang, Wibke Busch, Katja Scheffler, Patrick Renner, Uwe Strähle, Stefan Scholz

Sca-1+ Cardiac Stem Cells Mediate Acute Cardioprotection via Paracrine Factor SDF-1 following Myocardial Ischemia/Reperfusion
Chunyan Huang, Hongmei Gu, Qing Yu, Mariuxi C. Manukyan, Jeffrey A. Poynter, Meijing Wang

Metadherin Mediates Lipopolysaccharide-Induced Migration and Invasion of Breast Cancer Cells
Yuhan Zhao, Xiaoli Kong, Xiaoyan Li, Shi Yan, Cunzhong Yuan, Wenwei Hu, Qifeng Yang

Macrophage-Specific Chemokines Induced via Innate Immunity by Amino Acid Copolymers and Their Role in EAE
Joseph Kovalchin, Jeffrey Krieger, Michelle Genova, Norio Kawamoto, Michael Augustyniak, Kathryn Collins, Troy Bloom, Allyson Masci, Tara Hittinger, Ingrid Dufour, Jack L. Strominger, Eric Zanelli

Detection of Perturbation Phases and Developmental Stages in Organisms from DNA Microarray Time Series Data
Marianne Rooman, Jaroslav Albert, Yves Dehouck, Alexandre Haye

A Dominant Negative Zebrafish Ahr2 Partially Protects Developing Zebrafish from Dioxin Toxicity
Kevin A. Lanham, Amy L. Prasch, Kasia M. Weina, Richard E. Peterson, Warren Heideman

Efficient Culturing and Genetic Manipulation of Human Pluripotent Stem Cells
Robert T. Schinzel, Tim Ahfeldt, Frank H. Lau, Youn-Kyoung Lee, Alicia Cowley, Tony Shen, Derek Peters, David H. Lum, Chad A. Cowan

Regulation of Cysteinyl Leukotriene Receptor 2 Expression—A Potential Anti-Tumor Mechanism
Cecilia Magnusson, Astrid M. Bengtsson, Minghui Liu, Jian Liu, Yvonne Ceder, Roy Ehrnström, Anita Sjölander

Neuregulin 1 Type III/ErbB Signaling Is Crucial for Schwann Cell Colonization of Sympathetic Axons
Stephan Heermann, Julia Schmücker, Ursula Hinz, Michael Rickmann, Tilmann Unterbarnscheidt, Markus H. Schwab, Kerstin Krieglstein

Crosstalk between Nuclear Factor I-C and Transforming Growth Factor-β1 Signaling Regulates Odontoblast Differentiation and Homeostasis
Dong-Seol Lee, Won-Joon Yoon, Eui Sic Cho, Heung-Joong Kim, Richard M. Gronostajski, Moon-Il Cho, Joo-Cheol Park

Mesenchymal Stromal Cells Primed with Paclitaxel Provide a New Approach for Cancer Therapy
Augusto Pessina, Arianna Bonomi, Valentina Coccè, Gloria Invernici, Stefania Navone, Loredana Cavicchini, Francesca Sisto, Maura Ferrari, Lucia Viganò, Alberta Locatelli, Emilio Ciusani, Graziella Cappelletti, Daniele Cartelli, Caruso Arnaldo, Eugenio Parati, Giovanni Marfia, Roberto Pallini, Maria Laura Falchetti, Giulio Alessandri

RANKL Is a Downstream Mediator for Insulin-Induced Osteoblastic Differentiation of Vascular Smooth Muscle Cells
Ling-Qing Yuan, Jia-Hua Zhu, Hua-Wen Wang, Qiu-Hua Liang, Hui Xie, Xian-Ping Wu, Hua Zhou, Rong-Rong Cui, Zhi-Feng Sheng, Hou-De Zhou, Xiao Zhu, Guan-Ying Liu, You-Shuo Liu, Er-Yuan Liao

Maternal Periconceptional and Gestational Low Protein Diet Affects Mouse Offspring Growth, Cardiovascular and Adipose Phenotype at 1 Year of Age
Adam J. Watkins, Emma S. Lucas, Adrian Wilkins, Felino R. A. Cagampang, Tom P. Fleming

Granulin-Epithelin Precursor Is an Oncofetal Protein Defining Hepatic Cancer Stem Cells
Phyllis Fung Yi Cheung, Christine Kei Chin Cheng, Nicholas Chun Lim Wong, Jenny Chung Yee Ho, Chi Wai Yip, Vincent Chi Hang Lui, Annie Nga Yin Cheung, Sheung Tat Fan, Siu Tim Cheung

Detection and Quantification of Citrullinated Chemokines
Eva A. V. Moelants, Jo Van Damme, Paul Proost

Protein Profile Changes during Porcine Oocyte Aging and Effects of Caffeine on Protein Expression Patterns
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